STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC10793440940S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (249 aa)    
Predicted Functional Partners:
LOC107958736
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.990
LOC107891219
40S ribosomal protein S28-like.
  
 0.987
LOC107935967
40S ribosomal protein S28.
  
 0.987
LOC107942655
40S ribosomal protein S23-like; Belongs to the universal ribosomal protein uS12 family.
   
 0.986
LOC107957395
40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
   
 0.986
LOC107907364
U3 small nucleolar ribonucleoprotein protein IMP3-like.
   
 0.976
LOC107889621
40S ribosomal protein S18 isoform X1; Belongs to the universal ribosomal protein uS13 family.
   
 0.967
UBQ7
ubiquitin-40S ribosomal protein S27a.
   
 0.967
LOC107937524
ubiquitin-40S ribosomal protein S27a-like.
   
 0.965
LOC107953031
ubiquitin-40S ribosomal protein S27a-like.
   
 0.965
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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