STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107933481Pentatricopeptide repeat-containing protein At4g25270, chloroplastic-like. (522 aa)    
Predicted Functional Partners:
LOC107928892
Pentatricopeptide repeat-containing protein At2g15820, chloroplastic-like.
      
 0.479
LOC107943306
Pentatricopeptide repeat-containing protein At2g15820, chloroplastic-like.
      
 0.479
LOC107950529
Uncharacterized sugar kinase slr0537-like; Belongs to the carbohydrate kinase PfkB family.
    
 
 0.434
LOC107951756
Uncharacterized sugar kinase slr0537-like; Belongs to the carbohydrate kinase PfkB family.
    
 
 0.434
LOC107955527
Uncharacterized protein LOC107955527.
      
 0.434
LOC107958632
Uncharacterized protein LOC107958632.
      
 0.434
LOC107897493
Uncharacterized protein LOC107897493.
      
 0.426
LOC107914440
Uncharacterized protein LOC107914440.
      
 0.426
LOC107952752
Uncharacterized protein LOC107952752.
      
 0.422
LOC107954656
Uncharacterized protein LOC107954656 isoform X1.
      
 0.422
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.