STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107933696Putative RING-H2 finger protein ATL21A. (257 aa)    
Predicted Functional Partners:
LOC107900608
Cullin-associated NEDD8-dissociated protein 1-like.
   
 0.864
LOC107946347
Cullin-associated NEDD8-dissociated protein 1-like isoform X1.
   
 0.864
LOC107961951
Cullin-associated NEDD8-dissociated protein 1-like.
   
 0.864
LOC107903283
RING-box protein 1a-like.
    
 0.846
LOC107932799
RING-box protein 1a.
    
 0.846
LOC107932188
RING-box protein 1a-like.
    
 0.846
LOC107960807
RING-box protein 1-like.
    
 0.846
LOC107901422
F-box protein 7-like.
    
 0.839
LOC107962525
F-box protein 7-like.
    
 0.839
LOC107887198
E3 ubiquitin-protein ligase PRT1-like isoform X1.
    
 0.813
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.