STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107935124Transcription factor MYB108-like. (269 aa)    
Predicted Functional Partners:
LOC107943974
Serine/threonine-protein kinase TNNI3K-like.
   
  
 0.699
LOC107952515
Serine/threonine-protein kinase TNNI3K-like.
   
  
 0.699
LOC107889821
Somatic embryogenesis receptor kinase 1; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
   
  
 0.698
LOC107948406
Somatic embryogenesis receptor kinase 1-like; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
   
  
 0.698
LOC107952737
Photosystem II reaction center Psb28 protein; Belongs to the Psb28 family.
      
 0.692
LOC107946788
Disease resistance protein RPM1-like; Belongs to the disease resistance NB-LRR family.
   
  
 0.665
LOC107895151
ATP-dependent zinc metalloprotease FTSH 12, chloroplastic-like.
    
 
 0.640
LOC107906606
ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like isoform X1.
    
 
 0.640
LOC107917971
ATP-dependent zinc metalloprotease FTSH, chloroplastic; Belongs to the AAA ATPase family.
    
 
 0.640
LOC107919911
ATP-dependent zinc metalloprotease FTSH 12, chloroplastic-like isoform X1.
    
 
 0.640
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.