STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107937759Sphingolipid delta(4)-desaturase DES1-like; Sphingolipid-delta-4-desaturase required for the biosynthesis of delta-4-unsaturated sphingolipids and derivatives. (323 aa)    
Predicted Functional Partners:
LOC107933494
Ceramide kinase-like.
    
 0.934
LOC107955111
Ceramide kinase-like isoform X1.
    
 0.934
LOC107899707
3-dehydrosphinganine reductase TSC10A-like.
   
 
 0.841
LOC107957006
3-dehydrosphinganine reductase TSC10A-like.
   
 
 0.841
LOC107914002
Sphingosine kinase 1-like isoform X1.
    
 0.749
LOC107924409
Sphingosine kinase 1-like isoform X1.
    
 0.749
LOC107925234
Sphingosine kinase 1-like isoform X1.
    
 0.749
LOC107890496
Alkaline ceramidase 3-like.
   
 
 0.745
LOC107897147
Alkaline ceramidase 3-like.
   
 
 0.745
LOC107914806
Alkaline ceramidase 3-like.
   
 
 0.745
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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