STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107938172Geranylgeranyl transferase type-1 subunit beta-like. (376 aa)    
Predicted Functional Partners:
LOC107904382
Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha.
    
 0.998
LOC107932461
Transcription factor ABORTED MICROSPORES-like isoform X1.
    
 
 0.648
LOC107945067
Transcription factor ABORTED MICROSPORES-like isoform X1.
    
 
 0.648
LOC107894982
Protein TWIN LOV 1 isoform X1.
      
 0.572
LOC107930476
Protein TIME FOR COFFEE-like.
    
 
 0.561
LOC107899223
CAAX prenyl protease 2-like.
      
 0.538
LOC107948290
CAAX prenyl protease 2-like isoform X1.
      
 0.538
LOC107904369
Uncharacterized protein At2g38710-like.
    
   0.534
LOC107904764
Uncharacterized protein At2g38710-like.
    
   0.534
LOC107888645
Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
    
 
0.515
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.