STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC10793818821 kDa seed protein-like isoform X1. (225 aa)    
Predicted Functional Partners:
LOC107937524
ubiquitin-40S ribosomal protein S27a-like.
    
  0.543
LOC107953031
ubiquitin-40S ribosomal protein S27a-like.
    
  0.543
UBQ7
ubiquitin-40S ribosomal protein S27a.
    
  0.543
LOC107911562
Uncharacterized protein LOC107911562 isoform X1.
  
     0.509
LOC107944536
Putative lipid-binding protein AIR1.
  
     0.495
LOC107890203
Transcription factor PRE3-like.
  
     0.492
LOC107909826
Uncharacterized protein LOC107909826.
  
     0.485
LOC107950329
Uncharacterized protein LOC107950329.
  
     0.480
LOC107912955
CBS domain-containing protein CBSX6-like.
  
     0.465
LOC107893679
Photosynthetic NDH subunit of lumenal location 2, chloroplastic-like.
  
     0.464
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.