LOC107939035 protein (Gossypium hirsutum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107939035

Uncharacterized protein LOC107939035. (336 aa)

Predicted Functional Partners:

LOC107915460

0.520

LOC107889489

0.452

LOC107889487

0.452

LOC107891242

0.452

LOC107891243

0.452

LOC107899215

0.452

LOC107922438

0.452

rpl2-2

0.436

LOC107906927

0.433

LOC107948712

0.433

Your Current Organism:

Gossypium hirsutum

NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107889487	LOC107906927	A0A1U8HTR4	A0A1U8JMN5	60S ribosomal protein L21-1-like.	60S ribosomal protein L39-3-like.	0.993
LOC107889487	LOC107915460	A0A1U8HTR4	A0A1U8KC96	60S ribosomal protein L21-1-like.	60S ribosomal protein L13a-4-like.	0.956
LOC107889487	LOC107939035	A0A1U8HTR4	A0A1U8MLX1	60S ribosomal protein L21-1-like.	Uncharacterized protein LOC107939035.	0.452
LOC107889487	LOC107948712	A0A1U8HTR4	A0A1U8NIG7	60S ribosomal protein L21-1-like.	60S ribosomal protein L39.	0.993
LOC107889487	rpl2-2	A0A1U8HTR4	H9LF07	60S ribosomal protein L21-1-like.	50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family.	0.941
LOC107889489	LOC107906927	A0A0U1WT33	A0A1U8JMN5	60S ribosomal protein L21-1-like.	60S ribosomal protein L39-3-like.	0.993
LOC107889489	LOC107915460	A0A0U1WT33	A0A1U8KC96	60S ribosomal protein L21-1-like.	60S ribosomal protein L13a-4-like.	0.956
LOC107889489	LOC107939035	A0A0U1WT33	A0A1U8MLX1	60S ribosomal protein L21-1-like.	Uncharacterized protein LOC107939035.	0.452
LOC107889489	LOC107948712	A0A0U1WT33	A0A1U8NIG7	60S ribosomal protein L21-1-like.	60S ribosomal protein L39.	0.994
LOC107889489	rpl2-2	A0A0U1WT33	H9LF07	60S ribosomal protein L21-1-like.	50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family.	0.941
LOC107891242	LOC107906927	A0A1U8HZM7	A0A1U8JMN5	60S ribosomal protein L21-1-like.	60S ribosomal protein L39-3-like.	0.993
LOC107891242	LOC107915460	A0A1U8HZM7	A0A1U8KC96	60S ribosomal protein L21-1-like.	60S ribosomal protein L13a-4-like.	0.956
LOC107891242	LOC107939035	A0A1U8HZM7	A0A1U8MLX1	60S ribosomal protein L21-1-like.	Uncharacterized protein LOC107939035.	0.452
LOC107891242	LOC107948712	A0A1U8HZM7	A0A1U8NIG7	60S ribosomal protein L21-1-like.	60S ribosomal protein L39.	0.993
LOC107891242	rpl2-2	A0A1U8HZM7	H9LF07	60S ribosomal protein L21-1-like.	50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family.	0.941
LOC107891243	LOC107906927	A0A1U8I5H0	A0A1U8JMN5	60S ribosomal protein L21-1-like.	60S ribosomal protein L39-3-like.	0.993
LOC107891243	LOC107915460	A0A1U8I5H0	A0A1U8KC96	60S ribosomal protein L21-1-like.	60S ribosomal protein L13a-4-like.	0.956
LOC107891243	LOC107939035	A0A1U8I5H0	A0A1U8MLX1	60S ribosomal protein L21-1-like.	Uncharacterized protein LOC107939035.	0.452
LOC107891243	LOC107948712	A0A1U8I5H0	A0A1U8NIG7	60S ribosomal protein L21-1-like.	60S ribosomal protein L39.	0.993
LOC107891243	rpl2-2	A0A1U8I5H0	H9LF07	60S ribosomal protein L21-1-like.	50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family.	0.941

page 1 of 4

Server load: low (12%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About