STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107939460Protein CHROMATIN REMODELING 5-like. (1774 aa)    
Predicted Functional Partners:
LOC107899891
Uncharacterized protein LOC107899891.
    
 0.794
LOC107937765
LOW QUALITY PROTEIN: protein RTF1 homolog.
   
 
 0.768
LOC107946230
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
    
  0.761
LOC107926462
Chromatin structure-remodeling complex protein SYD-like.
  
0.757
LOC107895764
LOW QUALITY PROTEIN: chromatin structure-remodeling complex protein SYD-like.
  
0.756
LOC107915615
Chromatin structure-remodeling complex protein SYD-like.
  
0.756
LOC107929074
Chromatin structure-remodeling complex protein SYD-like.
  
0.756
LOC107941893
Protein MRG1-like.
    
 0.748
LOC107887235
High mobility group B protein 15-like isoform X1.
    
 0.736
LOC107902663
High mobility group B protein 9-like.
    
 0.736
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.