STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107939597Lariat debranching enzyme-like. (182 aa)    
Predicted Functional Partners:
LOC107962088
pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 isoform X1.
    
 
 0.784
LOC107887246
Zinc finger CCCH domain-containing protein 64-like.
   
 
 0.610
LOC107901111
Zinc finger CCCH domain-containing protein 64-like.
   
 
 0.610
LOC107940278
Peptidylprolyl isomerase.
      
 0.465
LOC107946014
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2.
    
 
 0.433
LOC107951302
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2.
    
 
 0.433
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.