STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107940502RBR-type E3 ubiquitin transferase. (574 aa)    
Predicted Functional Partners:
LOC107937524
ubiquitin-40S ribosomal protein S27a-like.
    
 0.768
LOC107953031
ubiquitin-40S ribosomal protein S27a-like.
    
 0.768
UBQ7
ubiquitin-40S ribosomal protein S27a.
    
 0.768
LOC107894020
E3 ubiquitin-protein ligase UPL4-like.
   
 
 0.640
LOC107899676
E3 ubiquitin-protein ligase UPL4-like isoform X1.
   
 
 0.640
LOC107948335
E3 ubiquitin-protein ligase UPL4-like isoform X2.
   
 
 0.640
LOC107891924
E3 ubiquitin-protein ligase UPL3-like.
   
 
 0.630
LOC107921785
E3 ubiquitin-protein ligase UPL3-like isoform X1.
   
 
 0.630
LOC107923222
E3 ubiquitin-protein ligase UPL3-like.
   
 
 0.630
LOC107928922
E3 ubiquitin-protein ligase UPL3-like.
   
 
 0.630
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.