STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107939337Amidase 1-like. (426 aa)    
Predicted Functional Partners:
LOC107929166
Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily.
 
 0.970
LOC107943115
Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily.
 
 0.970
LOC107948552
2-oxoglutarate-dependent dioxygenase DAO-like; Belongs to the iron/ascorbate-dependent oxidoreductase family.
     
  0.900
LOC107954857
2-oxoglutarate-dependent dioxygenase DAO-like; Belongs to the iron/ascorbate-dependent oxidoreductase family.
     
  0.900
LOC107921518
aspartate--tRNA ligase, chloroplastic/mitochondrial-like.
  
 0.801
LOC107922631
aspartate--tRNA ligase, chloroplastic/mitochondrial-like isoform X1.
  
 0.801
LOC107925479
aspartate--tRNA ligase, chloroplastic/mitochondrial-like isoform X1.
  
 0.801
LOC107907300
Flavin-containing monooxygenase.
    
 0.797
LOC107900975
glutamate--tRNA ligase, chloroplastic/mitochondrial-like; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.790
LOC107928970
glutamate--tRNA ligase, chloroplastic/mitochondrial-like isoform X1; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.790
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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