STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107939710Pentatricopeptide repeat-containing protein At4g16835, mitochondrial-like. (687 aa)    
Predicted Functional Partners:
LOC107894378
FRIGIDA-like protein; Belongs to the Frigida family.
    
 
 0.454
LOC107920541
FRIGIDA-like protein; Belongs to the Frigida family.
    
 
 0.454
LOC107912161
Transcription factor bHLH79 isoform X1.
      
 0.449
LOC107912207
Phospholipase A1-Ibeta2, chloroplastic-like.
   
  
 0.419
LOC107923041
Phospholipase A1-Ibeta2, chloroplastic-like.
   
  
 0.419
LOC107929347
Phospholipase A1-Ibeta2, chloroplastic-like.
   
  
 0.419
LOC107932346
Phospholipase A1-Ibeta2, chloroplastic-like.
   
  
 0.419
LOC107933705
Phospholipase A1-Ibeta2, chloroplastic-like.
   
  
 0.419
LOC107939708
Phospholipase A1-Ibeta2, chloroplastic-like.
   
  
 0.419
LOC107939894
Phospholipase A1-Ibeta2, chloroplastic.
   
  
 0.419
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
Server load: low (12%) [HD]