STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107940099DUF21 domain-containing protein At1g47330-like. (488 aa)    
Predicted Functional Partners:
LOC107929300
GMP synthase [glutamine-hydrolyzing]-like.
  
 
 0.558
LOC107936680
GMP synthase [glutamine-hydrolyzing]-like.
  
 
 0.558
LOC107962982
GMP synthase [glutamine-hydrolyzing]-like isoform X1.
  
 
 0.558
LOC107963780
GMP synthase [glutamine-hydrolyzing]-like.
  
 
 0.558
LOC107886999
Gamma-glutamyl peptidase 5-like.
    
 0.487
LOC107894173
Gamma-glutamyl peptidase 5-like.
    
 0.487
LOC107898771
Gamma-glutamyl peptidase 5-like.
    
 0.487
LOC107907726
Gamma-glutamyl peptidase 5-like.
    
 0.487
LOC107920347
Gamma-glutamyl peptidase 5-like.
    
 0.487
LOC107945175
Gamma-glutamyl peptidase 5-like.
    
 0.487
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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