STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107941660Protein SHORT-ROOT-like; Belongs to the GRAS family. (486 aa)    
Predicted Functional Partners:
LOC107935940
Protein SCARECROW-like; Belongs to the GRAS family.
  
 
 
0.837
LOC107960801
Protein SCARECROW-like; Belongs to the GRAS family.
  
 
 
0.837
LOC107928539
Protein SCARECROW-like; Belongs to the GRAS family.
  
 
 
0.831
LOC107941830
Protein SCARECROW-like isoform X1; Belongs to the GRAS family.
  
 
 
0.831
LOC107903114
Indole-3-acetic acid-induced protein ARG7-like.
  
     0.501
LOC107961432
NAC domain-containing protein 104-like.
  
     0.498
LOC107894627
Protein LNK1-like.
  
     0.496
LOC107891570
Transcription repressor OFP6-like.
  
     0.490
LOC107936366
Wound-induced protein 1-like.
  
     0.489
TIR1
Protein TRANSPORT INHIBITOR RESPONSE 1-like.
  
     0.487
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.