STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107942346RHOMBOID-like protein 12, mitochondrial isoform X1. (102 aa)    
Predicted Functional Partners:
LOC107958736
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 
 0.969
LOC107906927
60S ribosomal protein L39-3-like.
   
 0.962
LOC107948712
60S ribosomal protein L39.
   
 0.962
LOC107901301
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.958
rpl36
50S ribosomal protein L36, chloroplastic.
  
 
 0.958
LOC107954523
50S ribosomal protein L5, chloroplastic-like.
  
 0.956
LOC107955268
50S ribosomal protein L5, chloroplastic-like.
  
 0.956
LOC107904430
30S ribosomal protein S6-like.
   
 
 0.955
LOC107904716
Uncharacterized protein LOC107904716.
   
 
 0.955
LOC107891762
60S ribosomal protein L11-like; Belongs to the universal ribosomal protein uL5 family.
  
 0.954
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.