STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107942739AAA-ATPase At5g57480-like. (514 aa)    
Predicted Functional Partners:
LOC107901760
Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
  
  
 0.566
LOC107962314
Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
  
  
 0.566
rpl33
50S ribosomal protein L33, chloroplastic.
    
   0.512
LOC107901301
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.511
LOC107921058
50S ribosomal protein 5, chloroplastic-like.
    
   0.511
LOC107935486
50S ribosomal protein 5, chloroplastic-like isoform X1.
    
   0.511
rpl36
50S ribosomal protein L36, chloroplastic.
   
 
 0.511
LOC107937026
Uncharacterized protein LOC107937026; Belongs to the bacterial ribosomal protein bS18 family.
   
   0.506
rps18
30S ribosomal protein S18, chloroplastic; Belongs to the bacterial ribosomal protein bS18 family.
   
   0.506
LOC107931484
Putative E3 ubiquitin-protein ligase LIN-1.
      
 0.491
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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