STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107942922E3 ubiquitin-protein ligase PRT1-like. (476 aa)    
Predicted Functional Partners:
LOC107937524
ubiquitin-40S ribosomal protein S27a-like.
   
 0.973
LOC107953031
ubiquitin-40S ribosomal protein S27a-like.
   
 0.973
UBQ7
ubiquitin-40S ribosomal protein S27a.
   
 0.973
LOC107896337
ubiquitin-60S ribosomal protein L40-like.
    
 0.951
LOC107904552
ubiquitin-60S ribosomal protein L40-like.
    
 0.951
LOC107929499
ubiquitin-60S ribosomal protein L40-like.
    
 0.951
LOC107936781
Ubiquitin-like isoform X1.
    
 0.951
LOC107936779
ubiquitin-60S ribosomal protein L40-like.
    
 0.951
LOC107947199
ubiquitin-60S ribosomal protein L40.
    
 0.951
LOC107951713
ubiquitin-60S ribosomal protein L40-like.
    
 0.951
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.