STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107943486Non-specific serine/threonine protein kinase. (512 aa)    
Predicted Functional Partners:
LOC107942600
Phosphoglucan phosphatase DSP4, amyloplastic-like isoform X1.
    
 0.630
LOC107959510
Phosphoglucan phosphatase DSP4, amyloplastic-like isoform X1.
    
 0.630
LOC107926470
Phosphoglucan phosphatase LSF1, chloroplastic-like.
    
 0.629
LOC107942327
Phosphoglucan phosphatase LSF1, chloroplastic-like.
    
 0.629
LOC107930476
Protein TIME FOR COFFEE-like.
   
 0.563
LOC107922480
Protein LST8 homolog isoform X2.
    
 0.524
LOC107906210
SNF1-related protein kinase regulatory subunit beta-1-like.
    
 0.512
LOC107959040
SNF1-related protein kinase regulatory subunit beta-1-like.
    
 0.512
LOC107962786
SNF1-related protein kinase regulatory subunit beta-1-like.
    
 0.512
LOC107906460
SNF1-related protein kinase regulatory subunit gamma-like PV42a.
   
 0.496
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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