STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107945160Methyltransferase-like protein 13. (271 aa)    
Predicted Functional Partners:
LOC107930202
Pentatricopeptide repeat-containing protein At5g66520-like.
      
 0.465
LOC107939524
Pentatricopeptide repeat-containing protein At5g66520-like.
      
 0.449
LOC107951269
Pentatricopeptide repeat-containing protein At5g66520-like.
      
 0.449
LOC107931186
Pentatricopeptide repeat-containing protein At5g48910-like.
      
 0.448
LOC107921976
Pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like.
      
 0.420
LOC107922216
Pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like.
      
 0.420
LOC107910527
Probable receptor-like protein kinase At5g18500; Belongs to the protein kinase superfamily.
      
 0.406
LOC107936124
Probable receptor-like protein kinase At5g18500 isoform X1; Belongs to the protein kinase superfamily.
      
 0.406
LOC107951538
Probable receptor-like protein kinase At5g18500; Belongs to the protein kinase superfamily.
      
 0.406
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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