STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107945567Uncharacterized protein LOC107945567. (341 aa)    
Predicted Functional Partners:
LOC107913425
Ubiquitin-like modifier-activating enzyme 5.
     
 0.588
LOC107905375
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.
     
 0.552
LOC107905376
Putative transcription factor bHLH107.
     
 0.552
LOC107918492
Sm-like protein LSM7.
      
 0.506
LOC107926248
Sm-like protein LSM7.
      
 0.506
LOC107942765
Coiled-coil domain-containing protein 12-like.
      
 0.506
LOC107957362
Coiled-coil domain-containing protein 12-like.
      
 0.506
LOC107927766
Protein trichome birefringence-like 10 isoform X1.
     
 0.498
LOC107941834
NEDD8-activating enzyme E1 catalytic subunit-like isoform X1.
     
 0.498
LOC107942835
Protein trichome birefringence-like 10 isoform X2.
     
 0.498
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.