STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC1079473458-amino-7-oxononanoate synthase-like. (479 aa)    
Predicted Functional Partners:
LOC107944094
Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial.
    
 0.958
LOC107949677
8-amino-7-oxononanoate synthase-like.
  
  
 
0.900
LOC107939688
Biotin synthase-like.
  
  
 0.877
LOC107938950
Biotin synthase-like.
  
  
 0.877
LOC107905017
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
    
 0.771
LOC107924253
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
    
 0.771
LOC107899707
3-dehydrosphinganine reductase TSC10A-like.
     
 0.743
LOC107957006
3-dehydrosphinganine reductase TSC10A-like.
     
 0.743
LOC107889253
Syntaxin-71-like isoform X1; Belongs to the syntaxin family.
  
 
 0.737
LOC107891490
Syntaxin-71-like isoform X1; Belongs to the syntaxin family.
  
 
 0.737
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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