STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107948687DDB1- and CUL4-associated factor homolog 1-like. (1989 aa)    
Predicted Functional Partners:
LOC107908539
DNA damage-binding protein 1a.
    
 
 0.945
LOC107938502
DNA damage-binding protein 1a-like.
    
 
 0.945
LOC107947508
Uncharacterized protein LOC107947508.
    
 0.928
LOC107952124
Uncharacterized protein LOC107952124 isoform X1.
    
 0.928
LOC107916773
Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
    
 
 0.921
LOC107946297
Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
    
 
 0.921
LOC107886576
Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog isoform X1.
    
 
 0.892
LOC107909630
Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog isoform X1.
    
 
 0.892
LOC107911781
Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog.
    
 
 0.892
LOC107924610
Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog.
    
 
 0.892
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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