STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107949910Serine/threonine-protein phosphatase. (887 aa)    
Predicted Functional Partners:
LOC107886246
UPF0235 protein At5g63440-like isoform X1.
    
   0.882
LOC107950188
UPF0235 protein At5g63440 isoform X1.
    
   0.882
LOC107930476
Protein TIME FOR COFFEE-like.
    
 0.872
LOC107902537
Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like.
   
 0.843
LOC107907770
Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like.
   
 0.843
LOC107911021
lisH domain and HEAT repeat-containing protein KIAA1468 homolog.
   
 0.843
LOC107912914
lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1.
   
 0.843
LOC107920389
Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like.
   
 0.843
LOC107922376
Uncharacterized protein LOC107922376 isoform X1.
   
 0.843
LOC107923904
Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform.
   
 0.843
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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