STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107950659Uncharacterized protein LOC107950659. (352 aa)    
Predicted Functional Partners:
LOC107886579
Polygalacturonase 1 beta-like protein 3.
  
     0.519
LOC107940699
Polygalacturonase 1 beta-like protein 3.
  
     0.517
LOC107940877
Polygalacturonase 1 beta-like protein 3.
  
     0.517
LOC107931500
Transcription factor bHLH148-like.
  
     0.516
LOC107887203
Polygalacturonase 1 beta-like protein 3.
  
     0.514
LOC107910159
Polygalacturonase 1 beta-like protein 3.
  
     0.513
LOC107908189
Probable carboxylesterase 12.
  
     0.512
LOC107920747
Transcription factor bHLH149-like.
  
     0.512
LOC107921797
Uncharacterized protein LOC107921797.
  
     0.512
LOC107887202
Transcription factor bHLH149-like.
  
     0.511
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.