STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107951548tRNA pseudouridine synthase. (335 aa)    
Predicted Functional Partners:
LOC107930850
Ribosomal RNA small subunit methyltransferase H-like isoform X1.
   
 
 0.771
LOC107932998
Ribosomal RNA small subunit methyltransferase H-like.
   
 
 0.771
LOC107909039
50S ribosomal protein L17, chloroplastic-like; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.708
LOC107920921
50S ribosomal protein L17-like; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.708
LOC107922633
50S ribosomal protein L17-like isoform X1; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.708
LOC107925338
50S ribosomal protein L17-like; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.708
LOC107938672
50S ribosomal protein L17, chloroplastic-like; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.708
LOC107930519
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
 
 0.702
LOC107931570
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
 
 0.702
LOC107947175
Methyltransferase-like protein 17, mitochondrial.
  
   0.663
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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