STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107952358S-locus-specific glycoprotein S13-like. (511 aa)    
Predicted Functional Partners:
LOC107943835
Classical arabinogalactan protein 5.
    
 0.528
LOC107960851
BURP domain protein RD22-like.
  
 
  0.493
LOC107892860
Zinc finger protein ZAT11-like.
  
 
  0.491
LOC107939772
Transcription factor MYC4-like.
  
     0.488
LOC107950166
Transcription factor MYC4-like.
  
     0.488
LOC107898495
Transcription factor SCREAM2-like isoform X1.
  
     0.487
LOC107892208
Transcription factor SCREAM2-like isoform X1.
  
     0.486
LOC107957091
Transcription factor SCREAM2-like isoform X1.
  
     0.486
LOC107940042
Fasciclin-like arabinogalactan protein 4.
  
 
  0.484
LOC107955527
Uncharacterized protein LOC107955527.
  
     0.481
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.