STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107953264Transcription factor HBP-1b(C38)-like isoform X1. (468 aa)    
Predicted Functional Partners:
LOC107932804
Regulatory protein NPR1-like.
     
 0.689
LOC107940188
Regulatory protein NPR1-like.
     
 0.689
LOC107891749
Regulatory protein NPR3-like.
    
  0.655
LOC107897478
Regulatory protein NPR3-like.
    
  0.655
LOC107916443
Regulatory protein NPR3-like isoform X1.
    
  0.655
LOC107889382
Regulatory protein NPR5-like isoform X1.
     
 0.652
LOC107891351
Regulatory protein NPR5-like isoform X1.
     
 0.652
LOC107921109
Regulatory protein NPR5-like.
     
 0.652
LOC107921097
Regulatory protein NPR5-like.
     
 0.652
LOC107888467
Regulatory protein NPR3-like.
     
  0.650
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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