STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107953337Uncharacterized protein LOC107953337. (118 aa)    
Predicted Functional Partners:
LOC107922572
Uncharacterized protein LOC107922572; Belongs to the universal ribosomal protein uS5 family.
   
 0.994
rps2
30S ribosomal protein S2, chloroplastic.
   
 0.967
LOC107937026
Uncharacterized protein LOC107937026; Belongs to the bacterial ribosomal protein bS18 family.
   
 0.956
rps18
30S ribosomal protein S18, chloroplastic; Belongs to the bacterial ribosomal protein bS18 family.
   
 0.956
LOC107917933
LOW QUALITY PROTEIN: ribosomal protein S14, mitochondrial.
   
 0.948
rps14
30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.
   
 0.948
LOC107938549
50S ribosomal protein L25-like.
   
 0.946
LOC107942029
50S ribosomal protein L25-like.
   
 0.946
rps15
30S ribosomal protein S15, chloroplastic; Belongs to the universal ribosomal protein uS15 family.
   
 0.946
LOC107893660
28S ribosomal protein S29, mitochondrial-like.
   
 0.943
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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