STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107952943Alpha carbonic anhydrase 7-like isoform X1. (274 aa)    
Predicted Functional Partners:
LOC107905359
Ribosome production factor 2 homolog.
   
 
 0.766
LOC107942119
Ribosome production factor 2 homolog.
   
 
 0.766
LOC107928988
Cyanate hydratase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.
     
  0.650
LOC107907271
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
 
 0.644
LOC107953703
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
 
 0.644
LOC107891682
Periodic tryptophan protein 2 homolog.
   
    0.637
LOC107891762
60S ribosomal protein L11-like; Belongs to the universal ribosomal protein uL5 family.
    
 
 0.609
LOC107901696
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
    
 
 0.609
LOC107960236
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
    
 
 0.609
LOC107903176
60S ribosomal protein L5-like isoform X1.
    
 
 0.587
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.