STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107953738DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1204 aa)    
Predicted Functional Partners:
LOC107909149
DNA-directed RNA polymerases II and V subunit 6B-like.
  
 0.991
LOC107922778
DNA-directed RNA polymerases II, IV and V subunit 6A-like.
  
 0.991
LOC107936094
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 0.991
LOC107946230
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
   
 0.991
LOC107944407
Transcription termination/antitermination protein NusA-like.
  
 
 0.986
LOC107890391
DNA-directed RNA polymerases II, IV and V subunit 11.
   
 0.984
LOC107915795
DNA-directed RNA polymerases II, IV and V subunit 11-like.
   
 0.984
LOC107950661
DNA-directed RNA polymerases II, IV and V subunit 11-like.
   
 0.984
LOC107960061
DNA-directed RNA polymerases II, IV and V subunit 11-like.
   
 0.984
LOC107897505
DNA-directed RNA polymerase II subunit 4-like.
    
 0.981
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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