STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107953886Serine/threonine-protein kinase EDR1-like. (937 aa)    
Predicted Functional Partners:
LOC107943835
Classical arabinogalactan protein 5.
    
 0.724
LOC107888639
WD repeat-containing protein 48-like.
    
 
 0.699
LOC107893215
WD repeat-containing protein 48-like.
    
 
 0.699
LOC107920261
WD repeat-containing protein 48-like.
    
 
 0.699
LOC107920282
WD repeat-containing protein 48-like.
    
 
 0.699
LOC107891935
Transmembrane protein adipocyte-associated 1-like.
    
 
 0.698
LOC107961867
Transmembrane protein adipocyte-associated 1-like.
    
 
 0.698
LOC107926608
High-affinity nitrate transporter; Involved in nitrate transport.
      
 0.656
LOC107949732
High-affinity nitrate transporter; Involved in nitrate transport.
      
 0.656
LOC107953370
High-affinity nitrate transporter; Involved in nitrate transport.
      
 0.656
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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