STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107953301BTB/POZ domain-containing protein At3g44820-like; Belongs to the NPH3 family. (632 aa)    
Predicted Functional Partners:
LOC107947400
Ribosomal RNA small subunit methyltransferase E isoform X1.
      
 0.505
LOC107886969
Uncharacterized protein LOC107886969.
      
 0.455
LOC107947399
Uncharacterized protein LOC107947399.
      
 0.455
LOC107888510
Transcription elongation factor B polypeptide 3-like.
      
 0.453
LOC107931305
Transcription elongation factor B polypeptide 3-like.
      
 0.453
LOC107930663
Nitrilase-like protein 2.
      
 0.406
LOC107934172
Nitrilase-like protein 2.
      
 0.406
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.