STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107954459tRNA-splicing endonuclease subunit Sen2-1-like. (245 aa)    
Predicted Functional Partners:
LOC107922143
Uncharacterized protein LOC107922143 isoform X1.
    
 0.990
LOC107886853
Protein CLP1 homolog.
    
 0.904
LOC107959817
Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily.
    
 0.904
LOC107906177
Uncharacterized protein LOC107906177.
  
 
  0.676
LOC107905282
Uncharacterized protein LOC107905282 isoform X1.
   
 
 0.641
LOC107912311
Ribonucleases P/MRP protein subunit POP1-like isoform X1.
     
 0.555
LOC107922772
Ribonucleases P/MRP protein subunit POP1-like isoform X1.
     
 0.555
LOC107942887
tRNA-splicing endonuclease subunit Sen2-1-like.
  
  
 
0.546
LOC107950501
tRNA-dihydrouridine(20) synthase [NAD(P)+]-like.
   
    0.544
LOC107935484
tRNA-splicing endonuclease subunit Sen2-1-like.
  
  
 
0.543
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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