STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107953659Protein trichome birefringence-like 18. (569 aa)    
Predicted Functional Partners:
LOC107931469
Uncharacterized protein LOC107931469.
    
 0.915
LOC107957704
F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
    
 0.698
LOC107938465
Uncharacterized protein LOC107938465.
  
  
  0.582
LOC107933080
Uncharacterized protein LOC107933080.
  
  
  0.581
LOC107939440
Uncharacterized protein LOC107939440.
  
  
  0.561
LOC107946196
Uncharacterized protein LOC107946196.
  
  
  0.558
LOC107909528
Uncharacterized protein LOC107909528.
  
  
  0.543
LOC107893212
Ankyrin-1-like isoform X1.
    
 0.515
LOC107920489
Ankyrin-1-like isoform X1.
    
 0.515
LOC107949213
Protein PALE CRESS, chloroplastic isoform X1.
  
  
 0.498
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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