STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107954495Uncharacterized protein LOC107954495. (1340 aa)    
Predicted Functional Partners:
LOC107888367
LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH10-like.
   
 
 0.567
LOC107893491
LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH10-like.
   
 
 0.567
LOC107899861
DExH-box ATP-dependent RNA helicase DExH9-like.
   
 
 0.567
LOC107961953
DExH-box ATP-dependent RNA helicase DExH9-like isoform X1.
   
 
 0.567
LOC107892547
Uncharacterized protein At1g27050.
    
 
 0.525
LOC107902346
Uncharacterized protein At1g27050-like.
    
 
 0.525
LOC107923241
Leucine-rich repeat extensin-like protein 3.
    
 
 0.525
LOC107941912
Extensin-like.
    
 
 0.525
LOC107943189
Leucine-rich repeat extensin-like protein 3.
    
 
 0.525
LOC107924172
Flocculation protein FLO11-like.
  
    0.440
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
Server load: low (12%) [HD]