STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107954539E3 ubiquitin-protein ligase At3g02290-like isoform X1. (189 aa)    
Predicted Functional Partners:
LOC107925672
Ubiquitin-conjugating enzyme E2 variant 1D-like.
    
  0.581
LOC107928208
Ubiquitin-conjugating enzyme E2 variant 1D.
    
  0.581
LOC107951706
Ubiquitin-conjugating enzyme E2 variant 1C-like.
    
  0.581
LOC107903974
E3 ubiquitin-protein ligase RHA2A-like.
      
 0.459
LOC107959984
E3 ubiquitin-protein ligase RHA2A-like.
      
 0.459
LOC107889003
Uncharacterized protein LOC107889003 isoform X1.
     
 0.453
LOC107891786
E3 ubiquitin-protein ligase RNF8-A-like isoform X1.
     
 0.453
LOC107899529
Uncharacterized protein LOC107899529.
     
 0.453
LOC107925285
Peroxisome biogenesis factor 10-like.
     
 0.453
LOC107930126
Uncharacterized protein LOC107930126.
     
 0.453
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.