STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107954751Heterogeneous nuclear ribonucleoprotein 1-like. (340 aa)    
Predicted Functional Partners:
LOC107927522
Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.
    
 
 0.672
LOC107949131
Serine/arginine-rich splicing factor SC35-like isoform X1.
  
 
 0.658
LOC107948604
Serine/arginine-rich splicing factor SC35-like.
  
 
 0.656
LOC107893983
Serine/arginine-rich splicing factor SC35-like.
  
 
 0.648
LOC107939466
Nuclear cap-binding protein subunit 1-like.
    
 0.637
LOC107945163
Nuclear cap-binding protein subunit 1-like.
    
 0.637
LOC107920341
Serine/arginine-rich splicing factor SC35-like.
  
 
 0.631
LOC107914071
Cleavage stimulating factor 64.
  
 
 0.585
LOC107957702
Cleavage stimulating factor 64-like isoform X1.
  
 
 0.585
LOC107886794
Nuclear cap-binding protein subunit 2.
    
 0.578
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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