STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107954098Pumilio homolog 2-like isoform X1. (1060 aa)    
Predicted Functional Partners:
LOC107903565
Cytochrome c oxidase copper chaperone 1-like.
    
 
 0.557
LOC107903566
Uncharacterized protein LOC107903566.
    
 
 0.557
LOC107917553
Uncharacterized protein LOC107917553.
    
 
 0.557
LOC107924916
Uncharacterized protein LOC107924916.
    
 
 0.557
LOC107948652
Uncharacterized protein LOC107948652.
    
 
 0.557
LOC107952672
Uncharacterized protein LOC107952672.
    
 
 0.557
LOC107952762
Protein LSM12 homolog.
    
   0.552
LOC107961671
Protein LSM12 homolog.
    
   0.552
LOC107888314
acyl-CoA-binding domain-containing protein 4-like isoform X1.
   
   0.545
LOC107887632
acyl-CoA-binding domain-containing protein 4-like.
   
   0.545
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.