STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107956009Polygalacturonase-like. (248 aa)    
Predicted Functional Partners:
LOC107956224
Polygalacturonase-like; Belongs to the glycosyl hydrolase 28 family.
  
  
  0.815
LOC107955771
Polygalacturonase-like; Belongs to the glycosyl hydrolase 28 family.
  
  
  0.813
LOC107937429
Polygalacturonase-like; Belongs to the glycosyl hydrolase 28 family.
  
  
 
0.702
LOC107914715
Probable polygalacturonase At1g80170 isoform X1.
  
  
 
0.693
LOC107899988
Probable polygalacturonase At1g80170.
  
  
 
0.687
LOC107892783
Polygalacturonase-like; Belongs to the glycosyl hydrolase 28 family.
  
  
 
0.686
LOC107962623
Probable polygalacturonase At1g80170; Belongs to the glycosyl hydrolase 28 family.
  
  
 
0.681
LOC107907649
Probable polygalacturonase At3g15720.
  
  
 
0.675
LOC107926406
Polygalacturonase At1g48100.
  
  
 
0.675
LOC107915561
Polygalacturonase-like.
  
  
 
0.674
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.