STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107956361Uncharacterized protein LOC107956361. (254 aa)    
Predicted Functional Partners:
LOC107912907
Histone chaperone ASF1B-like.
    
 0.564
LOC107912764
Histone chaperone ASF1B-like.
    
 0.564
LOC107958736
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.553
LOC107898649
Protein GLE1-like.
    
 0.495
LOC107933406
Protein GLE1-like.
    
 0.495
LOC107891219
40S ribosomal protein S28-like.
   
   0.488
LOC107935967
40S ribosomal protein S28.
   
   0.488
LOC107925702
Aladin isoform X1.
    
 0.472
LOC107931823
Nuclear pore complex protein NUP88.
     
 0.447
LOC107948083
Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.
    
 0.428
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.