STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107958439Putative UPF0481 protein At3g02645 isoform X1. (557 aa)    
Predicted Functional Partners:
LOC107931104
Uncharacterized protein LOC107931104.
  
     0.540
LOC107931139
Uncharacterized protein LOC107931139 isoform X1.
  
     0.540
LOC107952786
Uncharacterized protein LOC107952786.
  
     0.539
LOC107902164
Uncharacterized protein LOC107902164.
  
     0.538
LOC107902899
Uncharacterized protein LOC107902899 isoform X1.
  
     0.537
LOC107947919
Uncharacterized protein LOC107947919.
  
     0.536
LOC107932752
Uncharacterized protein LOC107932752.
  
     0.534
LOC107942063
Uncharacterized protein LOC107942063.
  
     0.533
LOC107909255
Protein ULTRAPETALA 1-like.
  
     0.529
LOC107886748
Protein ULTRAPETALA 1-like.
  
     0.528
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.