STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107958103Putative pectinesterase/pectinesterase inhibitor 28. (344 aa)    
Predicted Functional Partners:
LOC107921536
LOW QUALITY PROTEIN: separase-like.
   
 
 0.740
LOC107925336
Separase-like.
   
 
 0.740
LOC107923544
Probable pectate lyase 19.
  
  
  0.735
LOC107886153
Pectate lyase.
     
  0.650
LOC107886801
Pectate lyase.
     
  0.650
LOC107886994
Pectate lyase.
     
  0.650
LOC107888018
Pectate lyase.
     
  0.650
LOC107886482
Pectate lyase.
     
  0.650
LOC107889720
Pectate lyase.
     
  0.650
LOC107887462
Pectate lyase.
     
  0.650
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.