Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107960134Uncharacterized protein LOC107960134. (298 aa)    
Predicted Functional Partners:
LOC107889787
Embryonic protein DC-8-like.
    
 0.728
LOC107908729
Embryonic protein DC-8-like.
    
 0.728
LOC107962055
Uncharacterized protein LOC107962055.
    
 0.664
LOC107893212
Ankyrin-1-like isoform X1.
    
 0.643
LOC107920489
Ankyrin-1-like isoform X1.
    
 0.643
LOC107886775
Two pore calcium channel protein 1-like.
    
 
 0.631
LOC107901268
annotation not available
    
 0.630
LOC107930842
annotation not available
    
 0.630
LOC107932993
Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein-like.
    
 0.630
LOC107962744
Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein-like.
    
 0.630
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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