Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC107961672Serine/threonine-protein kinase PBS1-like; Belongs to the protein kinase superfamily. (358 aa)    
Predicted Functional Partners:
LOC107953562
Protein STICHEL-like 2.
      
 0.500
LOC107943835
Classical arabinogalactan protein 5.
    
 0.452
LOC107914101
Thioredoxin Y1, chloroplastic-like.
    
 
 0.448
LOC107888449
ATP-dependent DNA helicase At3g02060, chloroplastic-like.
      
 0.441
LOC107889829
ATP-dependent DNA helicase At3g02060, chloroplastic-like.
      
 0.441
LOC107898777
Transcription-repair-coupling factor-like.
      
 0.441
LOC107909416
Two-component response regulator ARR22-like isoform X1.
      
 0.440
LOC107889586
Phosphoenolpyruvate carboxylase kinase 1-like; Belongs to the protein kinase superfamily.
  
 
  0.417
LOC107914687
Transcription factor bHLH128-like.
      
 0.405
LOC107941996
leucine--tRNA ligase, cytoplasmic-like; Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.402
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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