STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107962234Uncharacterized protein LOC107962234. (232 aa)    
Predicted Functional Partners:
LOC107939137
CRIB domain-containing protein RIC4-like.
  
     0.514
LOC107906126
Protein EARLY FLOWERING 3-like.
  
     0.513
LOC107947513
Uncharacterized protein At1g76070-like.
  
     0.510
LOC107934473
CRIB domain-containing protein RIC4-like.
  
     0.507
LOC107891717
Protein EARLY FLOWERING 3-like.
  
     0.505
LOC107889101
Protein EARLY FLOWERING 3-like.
  
     0.504
LOC107936891
Uncharacterized protein LOC107936891.
  
     0.503
LOC107930356
Uncharacterized protein LOC107930356.
  
     0.500
LOC107924191
Uncharacterized protein LOC107924191.
  
     0.493
LOC107935579
Putative disease resistance protein RGA3.
  
     0.491
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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