Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ENN88979.1Putative transcriptional regulator protein, LuxR family; Identified by sequence similarity; putative. (245 aa)    
Predicted Functional Partners:
ENN86615.1
Hypothetical protein.
 
 
 0.778
ENN86603.1
Conjugal transfer protein TraM; Identified by sequence similarity; putative.
    
  0.773
ENN84844.1
Putative autoinducer-binding protein transcriptional regulator; Identified by sequence similarity; putative.
  
 
 
0.623
ENN84058.1
Putative transcriptional regulator protein, LuxR family; Identified by sequence similarity; putative.
  
 
 
0.593
ENN84634.1
Amino acid adenylation; Identified by sequence similarity; putative; overlaps another CDS with the same product name.
   
  
 0.532
ENN87313.1
Hypothetical protein.
    
   0.530
ENN87898.1
Putative beta-lactamase family protein; Identified by sequence similarity; putative.
    
   0.530
ENN86858.1
Metallo-beta-lactamase superfamily; Identified by sequence similarity; putative.
    
   0.530
psuG
Hypothetical protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.
    
  0.512
ENN89214.1
Putative two-component regulator HPt domain protein; Identified by sequence similarity; putative.
  
  
 0.494
Your Current Organism:
Rhizobium freirei
NCBI taxonomy Id: 363754
Other names: R. freirei PRF 81, Rhizobium freirei PRF 81, Rhizobium sp. PRF 81
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