Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
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rlpARare lipoprotein A precursor protein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (396 aa)    
Predicted Functional Partners:
ENN89239.1
Putative TolB-like protein; Identified by sequence similarity; putative.
  
 
 0.815
ENN87123.1
Serine-type D-Ala-D-Ala carboxypeptidase; Identified by sequence similarity; putative; Belongs to the peptidase S11 family.
  
  
 0.711
lptD
LPS-assembly protein lptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
  
 0.666
ENN87394.1
Membrane-bound lytic murein transglucosyllase protein; Identified by sequence similarity; putative.
 
   
 0.572
holB
DNA-directed DNA polymerase; Identified by sequence similarity; putative.
  
  
 0.566
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.532
ENN86203.1
Penicillin-binding protein, 1A family; Identified by sequence similarity; putative.
 
   
 0.507
lnt
Putative transmembrane acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.
 
 
   0.501
mrcA
Penicillin binding protein peptidoglycan synthetase protein; Identified by sequence similarity; putative.
 
   
 0.498
ENN84454.1
Putative penicillin binding protein; Identified by sequence similarity; putative.
 
   
 0.486
Your Current Organism:
Rhizobium freirei
NCBI taxonomy Id: 363754
Other names: R. freirei PRF 81, Rhizobium freirei PRF 81, Rhizobium sp. PRF 81
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