Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENN84847.1Phage integrase family protein; Identified by sequence similarity; putative; overlaps another CDS with the same product name. (310 aa)    
Predicted Functional Partners:
ENN84848.1
Putative integrase/recombinase protein; Identified by sequence similarity; putative; overlaps another CDS with the same product name.
 
    
0.839
ENN87137.1
Putative integrase/recombinase Y4RA; Identified by sequence similarity; putative; overlaps another CDS with the same product name; Belongs to the 'phage' integrase family.
     0.790
ENN87135.1
Putative integrase/recombinase, phage integrase family; Identified by sequence similarity; putative; overlaps another CDS with the same product name.
  
     0.773
ENN85244.1
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
  0.543
ENN86294.1
Protein of unknown function DUF159; Identified by sequence similarity; putative; Belongs to the SOS response-associated peptidase family.
  
    0.538
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
    
  0.530
rpsH
SSU ribosomal protein S8p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.
    
  0.530
rpmE
50S ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.
    
 
 0.526
ENN87595.1
Hypothetical protein.
   
    0.523
rpsU
30S ribosomal protein S21; Identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.519
Your Current Organism:
Rhizobium freirei
NCBI taxonomy Id: 363754
Other names: R. freirei PRF 81, Rhizobium freirei PRF 81, Rhizobium sp. PRF 81
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