Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
ENN85992.1Outer membrane; Identified by sequence similarity; putative. (255 aa)    
Predicted Functional Partners:
ENN87614.1
Hypothetical protein.
 
 
 0.821
ENN89209.1
Putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase pyrophosphokinase; Identified by sequence similarity; putative.
    
  0.602
ENN89098.1
Thiol-disulfide oxidoreductase protein; Identified by sequence similarity; putative.
  
     0.584
ENN85993.1
Aminotransferase class I and II; Identified by sequence similarity; putative.
  
    0.583
ENN87361.1
Hypothetical protein; Belongs to the UPF0335 family.
  
     0.518
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
  
 0.507
polA
DNA-directed DNA polymerase, DNA polymerase I protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.488
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.
 
   
 0.440
recJ
single-stranded-DNA-specific exonuclease protein; Identified by sequence similarity; putative.
 
   
 0.433
ENN85968.1
Putative smf protein; Identified by sequence similarity; putative.
  
 
 
 0.432
Your Current Organism:
Rhizobium freirei
NCBI taxonomy Id: 363754
Other names: R. freirei PRF 81, Rhizobium freirei PRF 81, Rhizobium sp. PRF 81
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